View Processes Carabica
Organism: Coffea Arabica
Leader: Claudia Florez
Procceses Second Assembly from BGI
| Nro | Sequencing Center | Genome Trancriptome | Files | Files Description | Process Description | Server | Start Date | End Date | Results |
| Ca03 | BGI | Transcriptome | Coffea_arabica_l1_1_All.fq Coffea_arabica_l1_2_All.fq ReadsCenicafeCArabica.clean.fasta | Clean reads BGI – Clean reads Carabica Cenicafe | Assembly hybrid with CLC | Ticuna | 08-11-2011 | 09-11-2011 | Process Ca03 |
| Ca02 | BGI | Transcriptome | Coffea_arabica-Unigene.fa,Nr | Unigenes assembled by BGI – Nr | blastx | Pijao | 28-10-2011 | 09-11-2011 | Process Ca02 |
| Ca01 | BGI | Transcriptome | Coffea_arabica-Unigene.fa, Coffea_Arabica_49.fasta | Unigenes assembled by BGI – Cenicafe Contigs C. Arabica | Megablast Coffea_arabica-Unigene.fa with ESTs Cenicafe | Wayu | 28-10-2011 | 03-11-2011 | Process Ca01 |
Procceses First Assembly from BGI
| Nro | Sequencing Center | Genome Trancriptome | Files | Files Description | Process Description | Server | Start Date | End Date | Results |
| 008 | BGI | Transcriptome | Coffea_arabica.mRNA.PUT.fasta, ESTsCenicafeCArabica.clean.fasta | ESTs plantGDB, ESTs Cenicafe C. Arabica | Comparing ESTs of PlantGDB Vs ESTs Cenicafe C. Arabica | MAc Pro | 12-09-2011 | 12-09-2011 | Process 008 |
| 007 | BGI | Transcriptome | BGIUnigenes_ESTsCenicafe_CArabica.fasta.cap.contigs, BGIUnigenes_ESTsCenicafe_CArabica.fasta.cap.singlets | assembly BGI Unigenes with ESTs Cenicafe | Blast Hybrid Assembly Vs Nr | Tunebo | 07-09-2011 | 16-09-2011 | Process 007 |
| 006 | BGI | Transcriptome | Coffea_arabica-Unigene.oneline.fasta, ESTsCenicafeCArabica.clean.fasta, BGIUnigenes_ESTsCenicafe_CArabica.fasta | BGI-Unigenes, ESTs Cenicafe | Hybrid Assembly | Ticuna | 06-09-2011 | 06-09-2011 | Process 006 |
| 005 | BGI | Transcriptome | Coffea_arabica.mRNA.PUT.fasta | Contigs form PlantGDB | Blast Vs Nr | Tunebo | 23-08-2011 | 06-09-2011 | Process 005 |
| 004 | BGI | Transcriptome | cleanSeqs.fasta.clean, cleanSeqs.qual.clean | Reads C. Arabica without Contaminants | ReAssembling clean ESTs Coffea Arabica | Wayu | 02-09-2011 | 05-09-2011 | Process 004 |
| 003 | BGI | Transcriptome | cleanSeqs.fasta | All ESTs Arabica – Cenicafe | Clean contaminants ESTs Coffea Arabica | Wayu | 02-09-2011 | 02-09-2011 | Process 003 |
| 002 | BGI | Transcriptome | Coffea_arabica-UnigeneNotInCoffeaArabica49.fasta(35486), Nr | Sequences from BGI not in Coffea Arabica Release 49 | blast Coffea_arabica-UnigeneNotInCoffeaArabica49.fasta Vs Nr | Ticuna | 23-08-2011 | 27-08-2011 | Process 002 |
| 001 | BGI | Transcriptome | Coffea_arabica-Unigene.oneline.fasta.500, Nr | Sequences greater than 500bp | blast CoffeaArabica-Unigenes(bp>500) Vs Nr | Ticuna | 23-08-2011 | 27-08-2011 | Process1 |