View Process Hh 01
Running Repeat Modeler
Create a Database for RepeatModeler RepeatModeler uses the ABBlast/RMBlast(ncbi) database as input to the repeat modeling pipeline. A utility is provided to assist the user in creating a single database from several types of input structures.
/data/process/Broca/PipeLineGenBrocaEnsamble20kCNSG#
/opt/RepeatModeler/BuildDatabase -name GENOMABROCA_RMOD.fasta Ensamble20K/GENOMABROCA.fasta
Building database GENOMABROCA_RMOD.fasta:
Adding Ensamble20K/GENOMABROCA.fasta to database
Number of sequences (bp) added to database: 68390 ( 173473580 bp )
Run RepeatModeler
/opt/RepeatModeler/RepeatModeler -database GENOMABROCA_RMOD.fasta > run.out