View Process 003
formatdb -i AllBacterias.fasta -p F -o T
formatdb -i vector -p F -o T
/opt/seqclean/seqclean cleanSeqs.fasta -s AllBacterias.fasta,vector -c 2
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Sequences analyzed: 200347
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valid: 200096 (13 trimmed)
trashed: 251
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——= Trashing summary =———
by ‘short’: 247
by ‘shortq’: 1
by ‘AllBacterias.fasta’: 3
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Output file containing only valid and trimmed sequences: cleanSeqs.fasta.clean
For trimming and trashing details see cleaning report : cleanSeqs.fasta.cln
/opt/seqclean/cln2qual cleanSeqs.fasta.cln cleanSeqs.qual