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View Process

Organism: Hemileia Vastatrix
Leader: Marco Cristancho

Nro Sequencing Center Genome Trancriptome Files Files Description Process Description Server Start Date End Date Results
HV_04 MacroGene Genome /data/process/Roya/RawDataRoya/ Hv_2009.sff.bz2,Hv_2011_1.sff.gz, Hv_2011_2.sff.gz, Hv_2011_3.sff.gz, Hv_2011_4.sff.gz, Hv_2011_5.sff.gz, Hv_2011_6.sff.gz, HvCat_7-1_2011_7.sff, HvCat_7-2_2011_7.sff, Hv387_in.solexa.fastq.bz2,
Hv494_in.solexa.fastq.bz2, HvCat_in.solexa.fastq.bz2, HvDQ952_in.solexa.fastq.bz2, HvH_179_in.solexa.fastq.bz2, HvH_569_in.solexa.fastq.bz2, HvH_701_in.solexa.fastq.bz2, HvMar_1_in.solexa.fastq.bz2
HybridAssembly 454-Illumina with CLC Ticuna 14-09-2011 —- Process HV 04
HV_03 BGI Transcriptome /data/process/Roya/RawDataRoya/RNASeqBGI/ 2 of 3 files BGI – Transcriptome Assembly Illumina with Trinity Ticuna —- —- Process HV 03
HV_02 BGI Transcriptome trinity_out_dirHvCatNor7_L1.fq/Trinity.fasta Transcriptome Assembly of HvCatNor7_L1.fq Blast trinity_out_dirHvCatNor7_L1.fq/Trinity.fasta Vs Nr Tunebo 02-09-2011 06-09-2011 Process HV 02
HV_01 BGI Transcriptome /data/process/Roya/RawDataRoya/RNASeqBGI/HvCatNor7_L1.fq 1 of 3 files BGI – Transcriptome Assembly Illumina with Trinity Tunebo 29-08-2011 02-09-2011 Process HV 01

Organism: Hypothenemus Hampei
Leader: Pablo Benavides

Nro Sequencing Center Genome Trancriptome Files Files Description Process Description Server Start Date End Date Results
Hh_06 CNSG Genome 454Reads_Brocamacho3_.RL1.sff G0JGIQD01.RL1.sff GY3XZ9M01.RL1.sff GYO778V02.RL1.sff Genoma Coffee Berry Borer Male Singleton Extracting from Assembly Newbler Ticuna 13-09-2011 Process Hh 06
Hh_05 CNSG Genome Ensamble20K/GENOMABROCA.fasta,Hha_global_EST.fasta Complete Broca Genoma Annotation with maker Ticuna 07-09-2011 Process Hh 05
Hh_04 CNSG Genome Hha_global_EST.fasta,candidatos.txt candidatesGenes , ESTs Hh Interesting Genes Analysis-Maker Ticuna 06-09-2011 07-09-2011 Process Hh 04
Hh_02 CNSG Genome GENOMABROCA.fasta BROCA_Repbase.fasta —- Running REPEAT MASKER Tunebo 06-09-2011 07-09-2011 Process Hh 02
Hh_01 CNSG Genome /data/process/Broca/PipeLineGenBrocaEnsamble20kCNSG/GENOMABROCA_RMOD.fasta Complete Assembly of 454 of data H. Hampei Running REPEAT MODELLER Ticuna 31-08-2011 06-09-2011 Process Hh 01

Organism: Coffea Arabica
Leader: Claudia Florez

Nro Sequencing Center Genome Trancriptome Files Files Description Process Description Server Start Date End Date Results
008 BGI Transcriptome Coffea_arabica.mRNA.PUT.fasta, ESTsCenicafeCArabica.clean.fasta ESTs plantGDB, ESTs Cenicafe C. Arabica Comparing ESTs of PlantGDB Vs ESTs Cenicafe C. Arabica MAc Pro 12-09-2011 12-09-2011 Process 008
007 BGI Transcriptome BGIUnigenes_ESTsCenicafe_CArabica.fasta.cap.contigs, BGIUnigenes_ESTsCenicafe_CArabica.fasta.cap.singlets assembly BGI Unigenes with ESTs Cenicafe Blast Hybrid Assembly Vs Nr Tunebo 07-09-2011 Process 007
006 BGI Transcriptome Coffea_arabica-Unigene.oneline.fasta, ESTsCenicafeCArabica.clean.fasta, BGIUnigenes_ESTsCenicafe_CArabica.fasta BGI-Unigenes, ESTs Cenicafe Hybrid Assembly Ticuna 06-09-2011 06-09-2011 Process 006
005 BGI Transcriptome Coffea_arabica.mRNA.PUT.fasta Contigs form PlantGDB Blast Vs Nr Tunebo 23-08-2011 06-09-2011 Process 005
004 BGI Transcriptome cleanSeqs.fasta.clean, cleanSeqs.qual.clean Reads C. Arabica without Contaminants ReAssembling clean ESTs Coffea Arabica Wayu 02-09-2011 05-09-2011 Process 004
003 BGI Transcriptome cleanSeqs.fasta All ESTs Arabica – Cenicafe Clean contaminants ESTs Coffea Arabica Wayu 02-09-2011 02-09-2011 Process 003
002 BGI Transcriptome Coffea_arabica-UnigeneNotInCoffeaArabica49.fasta(35486), Nr Sequences from BGI not in Coffea Arabica Release 49 blast Coffea_arabica-UnigeneNotInCoffeaArabica49.fasta Vs Nr Ticuna 23-08-2011 27-08-2011 Process 002
001 BGI Transcriptome Coffea_arabica-Unigene.oneline.fasta.500, Nr Sequences greater than 500bp blast CoffeaArabica-Unigenes(bp>500) Vs Nr Ticuna 23-08-2011 27-08-2011 Process1