View Mapping of Transcriptome to Genome
BLAST Homologies
Transcriptomes vs HvCat Hybrid Assembly
e=1e-30
Transcriptomes vs Third All isolates Hybrid Assembly
We BLASTed the transcriptome paired assemblies (performed with Trinity) against the Third Hybrid Assembly (performed with CLC)
TRANSCRIPTOME vs GENOME
Normalized Transcriptome Library (44,297 seqs) vs Third Assembly (396,264 contigs)
E value = 1e-20
Mapped Sequences = 38,208(86,2%)
No hits = 6,089(13,8%)
Hv701 Transcriptome Library (55,701 seqs) vs Third Assembly (396,264 contigs)
E value = 1e-20
Mapped Sequences = 28,847(51,7%)
No hits = 26,944(48,3%)
Hv955 Transcriptome Library (64,752 seqs) vs Third Assembly (396,264 contigs)
E value = 1e-20
Mapped Sequences = 29,558(45,6%)
No hits = 35,194(64,4%)
TRANSCRIPTOME vs TRANSCRIPTOME
Normalized Transcriptome Library (44,297 seqs) vs Hv701 (55,701 contigs)
E value = 1e-20
Mapped Sequences = 33,657 (76%)
No hits = 10,640 (24%)
Normalized Transcriptome Library (44,297 seqs) vs Hv955 (64,752 contigs)
E value = 1e-20
Mapped Sequences = 34,644 (78,2%)
No hits = 9,653(21,8%)
Hv701 (55,701 seqs) vs Hv955 (64,752 contigs)
E value = 1e-20
Mapped Sequences = 43,318(77,7%)
No hits = 12,473 (22,3%)