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View Mapping of Transcriptome to Genome

BLAST Homologies

Transcriptomes vs HvCat Hybrid Assembly

e=1e-30

TranscriptomevsHvCatNorGenome.png

Transcriptomes vs Third All isolates Hybrid Assembly

We BLASTed the transcriptome paired assemblies (performed with Trinity) against the Third Hybrid Assembly (performed with CLC)

a.png

TRANSCRIPTOME vs GENOME
Normalized Transcriptome Library (44,297 seqs) vs Third Assembly (396,264 contigs)
E value = 1e-20

Mapped Sequences = 38,208(86,2%)
No hits = 6,089(13,8%)

Hv701 Transcriptome Library (55,701 seqs) vs Third Assembly (396,264 contigs)
E value = 1e-20

Mapped Sequences = 28,847(51,7%)
No hits = 26,944(48,3%)

Hv955 Transcriptome Library (64,752 seqs) vs Third Assembly (396,264 contigs)
E value = 1e-20

Mapped Sequences = 29,558(45,6%)
No hits = 35,194(64,4%)

TRANSCRIPTOME vs TRANSCRIPTOME

Normalized Transcriptome Library (44,297 seqs) vs Hv701 (55,701 contigs)
E value = 1e-20

Mapped Sequences = 33,657 (76%)
No hits = 10,640 (24%)

Normalized Transcriptome Library (44,297 seqs) vs Hv955 (64,752 contigs)
E value = 1e-20

Mapped Sequences = 34,644 (78,2%)
No hits = 9,653(21,8%)

Hv701 (55,701 seqs) vs Hv955 (64,752 contigs)
E value = 1e-20

Mapped Sequences = 43,318(77,7%)
No hits = 12,473 (22,3%)