View Hypothenemus Hampei
Organism: Hypothenemus Hampei
Leader: Pablo Benavides
| Nro | Sequencing Center | Genome Trancriptome | Files | Files Description | Process Description | Server | Start Date | End Date | Results |
| Hh_12 | BGI | Transcriptome | /data/process/Broca/RawDataBroca/TranscriptomaFalsaBroca/ G4GNOKD01.RL6_clean.fasta, G4GNOKD02.RL6_clean.fasta |
Hypothenemus obscurus Assembly. CLC Worbench | Clean reads extraction | Tunebo | 24-10-2011 | 24-10-2011 | Process Hh 12 |
| Hh_11 | BGI | Transcriptome-RNAseq | /data/process/Broca/BrocaRNAseq/Broca-SS.fq, /data/process/Broca/BrocaRNAseq/Broca-RR.fq | Broca Transcriptome Hybrid Assembly. CLC Worbench | Clean reads extraction | Tunebo | 28-09-2011 | — | Process Hh 11 |
| Hh_10 | CNSG | Genome-Transcriptome | /data/process/Broca/Jonathan/PipeLineAnalisisGenesInteresBroca/candidatos.fasta, /data/process/Broca/Transcriptoma/TRANSCRIPTOMABROCA.fasta, /data/process/Broca/BrocaRNASeq/Broca-SS.fq.fasta, /opt/snap/HMM/A.mellifera.hmm | Genes Candidatos, Broca Transcriptome assembly, Broca transcriptome reads | Tune Gene Prediction with Maker | Ticuna | 21-09-2011 | 22-09-2011 | Process Hh 10 |
| Hh_09 | CNSG | Genome | /data/process/Broca/Genoma/Ensamblajes/Ensamble4SffMacho/AssemblyMacho/assembly/TotalMacho.fasta, | Total Reads Hembra – Total Reads Macho | Blast Hembra-Macho | Tunebo | 20-09-2011 | 23-09-2011 | Process Hh 09 |
| Hh_08 | CNSG | Genome | Ensamble20K/GENOMABROCA.fasta | Complete Broca Genoma | Augustus Prediction And Blast2Go | Ticuna | 19-09-2011 | 23-09-2011 | Process Hh 08 |
| Hh_07 | CNSG | Transcriptome | /data/process/Broca/RawDataBroca/TranscriptomaFalsaBroca/G4GNOKD01.RL6_clean.sff, /data/process/Broca/RawDataBroca/TranscriptomaFalsaBroca/G4GNOKD02.RL6_clean.sff | Trancriptme Hypotenemus Obscurus | Singleton Extracting from Assembly Newbler | Ticuna | 14-09-2011 | — | Process Hh 07 |
| Hh_06 | CNSG | Genome | 454Reads_Brocamacho3_.RL1.sff G0JGIQD01.RL1.sff GY3XZ9M01.RL1.sff GYO778V02.RL1.sff | Genoma Coffee Berry Borer Male | Singleton Extracting from Assembly Newbler | Ticuna | 13-09-2011 | — | Process Hh 06 |
| Hh_05 | CNSG | Genome | Ensamble20K/GENOMABROCA.fasta,Hha_global_EST.fasta | Complete Broca Genoma | Annotation with maker | Ticuna | 07-09-2011 | 19-09-2011 | Process Hh 05 |
| Hh_04 | CNSG | Genome | Hha_global_EST.fasta,candidatos.txt | candidatesGenes , ESTs Hh | Candidate Genes Analysis-Maker | Ticuna | 06-09-2011 | 07-09-2011 | Process Hh 04 |
| Hh_02 | CNSG | Genome | GENOMABROCA.fasta BROCA_Repbase.fasta | —- | Running REPEAT MASKER | Tunebo | 06-09-2011 | 07-09-2011 | Process Hh 02 |
| Hh_01 | CNSG | Genome | /data/process/Broca/PipeLineGenBrocaEnsamble20kCNSG/GENOMABROCA_RMOD.fasta | Complete Assembly of 454 of data H. Hampei | Running REPEAT MODELLER | Ticuna | 31-08-2011 | 06-09-2011 | Process Hh 01 |