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View Hemileia vastatrix

Organism: Hemileia Vastatrix
Leader: Marco Cristancho

Illumina Assembly

Nro Sequencing Center Genome Trancriptome Files Files Description Process Description Server Start Date End Date Results
HV_09 BGI Trancriptome All Strains All Strains assembled Test Cufflinks, tophat, bowtie with Hemileia transcriptome Discovering novel genes and transcripts – Identifying differentially expressed and regulated genes Ticuna 02-02-2012 —- Discovering novel genes and transcripts – Identifying differentially expressed and regulated genes
HV_08 BGI Trancriptome All Strains All Strains assembled Test RNA-SeQC with Hemileia transcriptome Ticuna 02-02-2012 07-02-2012 Test RNA-SeQC with Hemileia Transcriptome
HV_07 BGI Genome All Strains All Strains assembled Extract contigs existing in All Assembled Strains Ticuna 19-1-2012 19-1-2012 Extract Contigs Existing in All Strains
HV_06 BGI Genome All Strains All Strains assembled Extract reads from differents Strains Assembled Ticuna 12-1-2012 12-1-2012 Extract Reads from Assemblies
HV_05 BGI Genome Hv387_1.fastq, Hv387_2.fastq Illumina Raw data Assembly Ticuna 22-11-2011 —- Rust Illumina Assembly of Differents Strains

First Assembly

Nro Sequencing Center Genome Trancriptome Files Files Description Process Description Server Start Date End Date Results
HV_04 MacroGene Genome /data/process/Roya/RawDataRoya/ Hv_2009.sff.bz2,Hv_2011_1.sff.gz, Hv_2011_2.sff.gz, Hv_2011_3.sff.gz, Hv_2011_4.sff.gz, Hv_2011_5.sff.gz, Hv_2011_6.sff.gz, HvCat_7-1_2011_7.sff, HvCat_7-2_2011_7.sff, Hv387_in.solexa.fastq.bz2,
Hv494_in.solexa.fastq.bz2, HvCat_in.solexa.fastq.bz2, HvDQ952_in.solexa.fastq.bz2, HvH_179_in.solexa.fastq.bz2, HvH_569_in.solexa.fastq.bz2, HvH_701_in.solexa.fastq.bz2, HvMar_1_in.solexa.fastq.bz2
HybridAssembly 454-Illumina with CLC Ticuna 14-09-2011 —- Third Hybrid Assembly of 454 and Illumina data with CLC
HV_03 BGI Transcriptome /data/process/Roya/RawDataRoya/RNASeqBGI/ 2 of 3 files BGI – Transcriptome Assembly Illumina with Trinity Ticuna —- —- Process HV 03
HV_02 BGI Transcriptome trinity_out_dirHvCatNor7_L1.fq/Trinity.fasta Transcriptome Assembly of HvCatNor7_L1.fq Blast trinity_out_dirHvCatNor7_L1.fq/Trinity.fasta Vs Nr Tunebo 02-09-2011 06-09-2011 Process HV 02
HV_01 BGI Transcriptome /data/process/Roya/RawDataRoya/RNASeqBGI/HvCatNor7_L1.fq 1 of 3 files BGI – Transcriptome Assembly Illumina with Trinity Tunebo 29-08-2011 02-09-2011 Process HV 01