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View Hemileia Vastatrix

Organism: Hemileia Vastatrix
Leader: Marco Cristancho

Illumina Assembly

Nro Sequencing Center Genome Trancriptome Files Files Description Process Description Server Start Date End Date Results
HV_18 BGI Genome CLCAssemblyAll454HvCatIllum.fasta First we selected the contigs from thir CLCAssemblyAll454HvCatIllum with CLC represented by RNASeq data and then use them to run blast2Go Annotation Ticuna 16-04-2012 —- Blast2Go Maker-Augustus output RNASeq Cufflinks CLCAssemblyAll454HvCatIllum
HV_17 BGI Genome-Transcriptome CLCAssemblyAll454HvCatIllum.fasta, Caturra_IncubationP.fastq, Caturra_H20.fastq Expression Analisis Caturra H20, Caturra IncubationP – CLCAssemblyAll454HvCatIllum Ticuna 22-05-2012 Expression Analysis Caturra H20 Caturra IncubationP – CLCAssemblyAll454HvCatIllum
HV_16 BGI Genome-Transcriptome CLCAssemblyAll454HvCatIllum.fasta CLC Assembly All 454 and HvCat Illumina Discovering novel genes and transcripts – CLCAssemblyAll454HvCatIllum Ticuna 18-05-2012 19-05-2012 Discovering novel genes and transcripts – CLCAssemblyAll454HvCatIllum
HV_15 BGI Transcriptome CLCAssemblyAll454HvCatIllum.fasta CLC Assembly All 454 and HvCat Illumina Transposons Tunebo 03-05-2012 Transposons CLCAssemblyAll454HvCatIllum
HV_14 BGI Transcriptome Hv_peps70.fasta Peptides greater 70 bp predicted by maker-augustus Gene Families Wayu 24-04-2012 24-04-2012 Gene Families with OrthoMCL
HV_13 BGI Genome RNASeqCufflinksThirdHybridAssemblyCLC.fasta First we selected the contigs from thir hybrid assembly with CLC represented by RNASeq data and then use them to run blast2Go Annotation Ticuna 16-04-2012 —- Blast2Go Maker-Augustus output RNASeq Cufflinks ThirdHybridAssembly CLC
HV_12 BGI Genome RNASeqCufflinksThirdHybridAssemblyCLC.fasta First we selected the contigs from thir hybrid assembly with CLC represented by RNASeq data and then use them to run maker Annotation, Run Maker Ticuna 30-03-2012 02-04-2012 Maker RNASeq Cufflinks ThirdHybridAssembly CLC
HV_11 BGI Genome ThirdHybridAssemblyCLC Thrird Hybrid Assembly done with CLC Masking Assembly Ticuna 30-03-2012 —- Masking CLC Assemblies
HV_10 BGI Genome 454 Files – HvCat Illumina 454 Reads – HvCat Illumina Mira and CLC Assembly 454 Reads- HvCat Illumina Ticuna 01-03-2012 —- Mira and CLC Assembly 454 Reads- HvCat Illumina
HV_09 BGI Trancriptome All Strains All Strains assembled Test Cufflinks, tophat, bowtie with Hemileia transcriptome Discovering novel genes and transcripts – Identifying differentially expressed and regulated genes Ticuna 02-02-2012 22-02-2012 Discovering novel genes and transcripts – Identifying differentially expressed and regulated genes
HV_08 BGI Trancriptome All Strains All Strains assembled Test RNA-SeQC with Hemileia transcriptome Ticuna 02-02-2012 07-02-2012 Test RNA-SeQC with Hemileia Transcriptome
HV_07 BGI Genome All Strains All Strains assembled Extract contigs existing in All Assembled Strains Ticuna 19-1-2012 19-1-2012 Extract Contigs Existing in All Strains
HV_06 BGI Genome All Strains All Strains assembled Extract reads from differents Strains Assembled Ticuna 12-1-2012 12-1-2012 Extract Reads from Assemblies
HV_05 BGI Genome Hv387_1.fastq, Hv387_2.fastq Illumina Raw data Assembly Ticuna 22-11-2011 —- Rust Illumina Assembly of Differents Strains

First Assembly

Nro Sequencing Center Genome Trancriptome Files Files Description Process Description Server Start Date End Date Results
HV_04 MacroGene Genome /data/process/Roya/RawDataRoya/ Hv_2009.sff.bz2,Hv_2011_1.sff.gz, Hv_2011_2.sff.gz, Hv_2011_3.sff.gz, Hv_2011_4.sff.gz, Hv_2011_5.sff.gz, Hv_2011_6.sff.gz, HvCat_7-1_2011_7.sff, HvCat_7-2_2011_7.sff, Hv387_in.solexa.fastq.bz2,
Hv494_in.solexa.fastq.bz2, HvCat_in.solexa.fastq.bz2, HvDQ952_in.solexa.fastq.bz2, HvH_179_in.solexa.fastq.bz2, HvH_569_in.solexa.fastq.bz2, HvH_701_in.solexa.fastq.bz2, HvMar_1_in.solexa.fastq.bz2
HybridAssembly 454-Illumina with CLC Ticuna 14-09-2011 —- Third Hybrid Assembly of 454 and Illumina data with CLC
HV_03 BGI Transcriptome /data/process/Roya/RawDataRoya/RNASeqBGI/ 2 of 3 files BGI – Transcriptome Assembly Illumina with Trinity Ticuna —- —- Process HV 03
HV_02 BGI Transcriptome trinity_out_dirHvCatNor7_L1.fq/Trinity.fasta Transcriptome Assembly of HvCatNor7_L1.fq Blast trinity_out_dirHvCatNor7_L1.fq/Trinity.fasta Vs Nr Tunebo 02-09-2011 06-09-2011 Process HV 02
HV_01 BGI Transcriptome /data/process/Roya/RawDataRoya/RNASeqBGI/HvCatNor7_L1.fq 1 of 3 files BGI – Transcriptome Assembly Illumina with Trinity Tunebo 29-08-2011 02-09-2011 Process HV 01