View Expression Analysis Caturra H20 Caturra IncubationP - CLCAssemblyAll454HvCatIllum
Map the reads for each strain to the reference genome
/opt/tophat-1.3.3/bin/tophat -r 100 -o tophatCatH20 ../cufflinksCLCAssemblyAll454HvCatIllum/CLCAssemblyAll454HvCatIllum ../RNA_seq_coffeerust/Caturra_H20.fastq &