View Beauveria bassiana Gene Families with OrthoMCL
Run OrthoMCL
sudo /opt/orthomcl/orthomcl.pl —mode 1 —fa_files “Bb9119_peps70.fasta”
Count genes by clusters
grep ‘ORTH’ all_orthomcl.out | awk ‘{print $1 $2}’ | sed ‘s/(/\t/’ | sed ‘s/genes,1//’ > Bb9119OrthoMCL_clusterCount.txt