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View Beauveria bassiana Gene Families with OrthoMCL

Run OrthoMCL

sudo /opt/orthomcl/orthomcl.pl —mode 1 —fa_files “Bb9119_peps70.fasta”

Count genes by clusters

grep ‘ORTH’ all_orthomcl.out | awk ‘{print $1 $2}’ | sed ‘s/(/\t/’ | sed ‘s/genes,1//’ > Bb9119OrthoMCL_clusterCount.txt

File:Bb peps70 OrthoMCL.zip