View Bb9024 CLC Assembly
Assembly Clean data Bb9024 with CLC
time /opt/CLC/clc-assembly-cell-4.0.1beta-linux_64/clc_novo_assemble -q -p fb ss 100 400 ../Bb9024_Clean_Velvet/Bb9024_1_trim.fasta -o Bb9024_trim.fasta
real 42m23.096s
user 103m4.280s
sys 0m15.630s
time clc_ref_assemble_long -o Bb9024_trim.fasta.cas -d Bb9024_trim.fasta -q -p fb ss 100 400 -q ../Bb9024_Clean_Velvet/Bb9024_1_trim.fasta
Progress: 100.0 %
real 20m52.233s
user 48m59.500s
sys 0m52.140s
sequence_info -n -r Bb9024_trim.fasta
File Bb9024_trim.fasta Number of sequences 22714 Residue counts: Number of A's 10425210 25.31 % Number of C's 9977674 24.22 % Number of G's 9980336 24.23 % Number of T's 10402045 25.25 % Number of N's 404529 0.98 % Total 41189794 Sequence lengths: Minimum 200 Maximum 91881 Average 1813.41 N50 8307
assembly_info -p fb ss 100 400 Bb9024_trim.fasta.cas > Bb9024_trim.fasta.cas.txt
General info: Program name clc_ref_assemble_long Program version 4.01beta.59919 Program parameters -o Bb9024_trim.fasta.cas -d Bb9024_trim.fasta -q -p fb ss 100 400 -q ../Bb9024_Clean_Velvet/Bb9024_1_trim.fasta Contig files: Bb9024_trim.fasta [ 22714 / 41189794 ] Read files: ../Bb9024_Clean_Velvet/Bb9024_1_trim.fasta [ 30385592 / 2661147963 ] <paired> Read info: Contigs 22714 Reads 30385592 Unmapped reads 639682 2.11 % Mapped reads 29745910 97.89 % Multi hit reads 268495 0.90 % Paired 26001414 85.57 % Unpaired 4384178 14.43 % Paired end info: Paired reads 26001426 85.57 % Average distance 258.49 99.9 % of pairs between 102 - 391 99.0 % of pairs between 115 - 368 95.0 % of pairs between 148 - 350 Unpaired reads 4384166 14.43 % Both seqs not matching 154224 3.52 % One seq not mathing 970916 22.15 % Both seqs matching 3259026 74.34 % Different contigs 2992416 91.82 % Wrong directions 207822 6.38 % Too close 35044 1.08 % Too far 23744 0.73 % Coverage info: Mapped nucleotides 2558660742 96.15 % Total sites 41189794 Average coverage 62.12