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View BLAST vs Cenicafe Coffea arabica ESTs

BLAST vs Cenicafe Coffea arabica ESTs

blastall -p blastn -d Coffea_arabica-Unigene.fa -i <Query's> -o Coffea_arabica-Unigene_vs_<Query's .out> -e 1e-5 [-m8]

The corresponding Querys are:

  1. AllCoffea.fasta – 66897 Contigs: All transcriptome of Coffee species from CENICAFE.
  2. CarabicaBGItrim_CenicafeCArabica.fasta – 55554 Contigs: Hybrid Assembly CENICAFE ESTs + RNASeq BGI China – Assembly with CLC.
  3. Coffea_Arabica_49.fasta – 40038 Contigs. CENICAFE C- arabica ESTs (Includes brazilian ESTs).

Coffea_Arabica.png