Navigation

 ·   Wiki Home
 ·   Data Processing
 ·   Hemileia vastatrix
 ·   Hypothenemus hampei
 ·   Coffea
 ·   Beauveria bassiana
 ·  
 ·   Title List
 ·   Uncategorized Pages
 ·   Random Page
 ·   Recent Changes
 ·   Wiki Help
 ·   What Links Here

Active Members:

Search:

 

Create or Find Page:

 

View Assembly Bb9024 Clean With CLC

clc_novo_assemble -q -p fb ss 100 400 ../Bb9024_Clean_Velvet/Bb9024_1_trim.fasta -o Bb9024_trim.fasta
Progress: 100.0 %

sequence_info -n -r Bb9024_trim.fasta

File                           Bb9024_trim.fasta

Number of sequences                 22745

Residue counts:
  Number of A's                  10420870   25.30 %
  Number of C's                   9978050   24.22 %
  Number of G's                   9981557   24.23 %
  Number of T's                  10409655   25.27 %
  Number of N's                    406359    0.99 %
  Total                          41196491

Sequence lengths:
  Minimum                             200
  Maximum                           91881
  Average                            1811.23
  N50                                8297

clc_ref_assemble_long -o Bb9024_trim.fasta.cas -d Bb9024_trim.fasta -q -p fb ss 100 400 -q ../Bb9024_Clean_Velvet/Bb9024_1_trim.fasta